ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGTTGTCTCAAGCTT miRNA* GCTAGAGGCAGCAACTGCATA mismatches: 1 bulges: 0 |
pre-miRNA
TGCAAGTGGCGGCAGCAAGCTAGAGGCAGCAACTGCATACCTTGCAAGAAAAAATCGGTTTTGTTGACGTACCGATGATTTTCTTGCAAGTTGTGCAGTT
GTTGTCTCAAGCTTGCTGCCTCCCTTTGC
dot-bracket secondary structure
.(((((.((.(((((((((((.(((((((((((((((((.((((((((((((.((((((..((....)).))))))..)))))))))))).)))))))))
)))))))).))))))))))).)).)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCAAGTGGCGGCAGCAAGCTAGAGGCAGCAACTGCATACCTTGCAAGAAAAAATCGGTTTTGTTGACGTACCGATGATTTTCTTGCAAGTTGTGCAGTT
GTTGTCTCAAGCTTGCTGCCTCCCTTTGC
dot-bracket secondary structure
.(((((.((.(((((((((((.(((((((((((((((((.((((((((((((.((((((..((....)).))))))..)))))))))))).)))))))))
)))))))).))))))))))).)).)))))
SIMILARITIES| miRBase osa-MIR444c: 4e-41 PMRD pvi-miR444: 3e-32 microPC miR444: 8e-58 | UniProt sp|Q6EP49|MAD27_ORYSJ: 0.0007 RFAM MIR444: 6e-68 | most similar mature miRNAs |
Identical with: miR444 from microPC (MNEST045168) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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