ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTG miRNA* GAGCTCCTCTCATTCCAATGA mismatches: 3 bulges: 0 |
pre-miRNA
GCAGATGCTTTGGATTTGAAGCGGAGCTCCTCTCATTCCAATGAAGGGTCCTTCCGAAGGGTGGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCT
CATCCATGCTTGTGTGTCTTCGAGAGGAAGCGGAAGAGATTCCTGTGGTCGCCTTTTGAGATAGGCTTGTGGTTTGCATGACCGAGGAGCTGCACCGACC
CCGTGCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCCTGATCCACCCCCCAT
dot-bracket secondary structure
((....))..((((((.((.(((((((((((.(((.(((((.((..((.((...((..(((((((...(((.((((.(((((....((((...(((((((
((.(((((((........(((....))))))((((....)))).))))........)))))))))...))))....))))).)))).)))...))).)))
)..))..))))..)).))))).))).))))))))))).))..))))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCAGATGCTTTGGATTTGAAGCGGAGCTCCTCTCATTCCAATGAAGGGTCCTTCCGAAGGGTGGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCT
CATCCATGCTTGTGTGTCTTCGAGAGGAAGCGGAAGAGATTCCTGTGGTCGCCTTTTGAGATAGGCTTGTGGTTTGCATGACCGAGGAGCTGCACCGACC
CCGTGCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCCTGATCCACCCCCCAT
dot-bracket secondary structure
((....))..((((((.((.(((((((((((.(((.(((((.((..((.((...((..(((((((...(((.((((.(((((....((((...(((((((
((.(((((((........(((....))))))((((....)))).))))........)))))))))...))))....))))).)))).)))...))).)))
)..))..))))..)).))))).))).))))))))))).))..))))))........
SIMILARITIES| miRBase zma-MIR159f: 2e-115 PMRD sof-miR159a: 7e-60 microPC miR319: 1e-18 | UniProt no hits RFAM MIR159: 5e-61 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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