ABOUT THIS RECORDspecies: Zea mays
miRNA family: miR159a
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGCTCCTATCATTCCAATGA miRNA* TTTGGATTGAAGGGAGCTCTG mismatches: 3 bulges: 0 |
pre-miRNA
CGTTTGAAGCGGAGCTCCTATCATTCCAATGAAGGGTCGTTCCGAAGGGCTGGATCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTCATCATGTGTA
TATATGTAATCCATGTGGGAGGGTTTCTCTCGTCTTTGAGATAGGCTTGTGGTTTGCATGACCGAGGAGCTGCACCGCCCCCTTGCTGGCCGCTCTTTGG
ATTGAAGGGAGCTCTGCATCCTGA
dot-bracket secondary structure
.....((.(((((((((((.(((.(((((.((..(((((...(((.(((.(((....(((.((((.(((((....((((...((((((((((((((((.(
(.......)).)))))))(((((...))))).....)))))))))...))))....))))).)))).)))....))).))).))).)))))..)).))))
).))).))))))))))).))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGTTTGAAGCGGAGCTCCTATCATTCCAATGAAGGGTCGTTCCGAAGGGCTGGATCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTCATCATGTGTA
TATATGTAATCCATGTGGGAGGGTTTCTCTCGTCTTTGAGATAGGCTTGTGGTTTGCATGACCGAGGAGCTGCACCGCCCCCTTGCTGGCCGCTCTTTGG
ATTGAAGGGAGCTCTGCATCCTGA
dot-bracket secondary structure
.....((.(((((((((((.(((.(((((.((..(((((...(((.(((.(((....(((.((((.(((((....((((...((((((((((((((((.(
(.......)).)))))))(((((...))))).....)))))))))...))))....))))).)))).)))....))).))).))).)))))..)).))))
).))).))))))))))).))....
SIMILARITIES| miRBase zma-MIR159a: 3e-120 PMRD zma-miR159a: 3e-120 microPC miR319: 4e-21 | UniProt no hits RFAM MIR159: 5e-104 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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