ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGAGAGCGAGCAC miRNA* GCTCGCTTCTCTTTCTGTCAGCC mismatches: 0 bulges: 2 |
pre-miRNA
ATAGTCGATTGGGCTTAGGCCCCGAAGAGATTGACAGAAGAGAGCGAGCACCTGGCGCGGCGACCGGCATGGAACGCATGCCGTCCCCGCCGCGTGCTCG
CTTCTCTTTCTGTCAGCCTCTCCCTCGTCCTGAGCCGACGCCGAT
dot-bracket secondary structure
...((((....((((((((...(((((((.(((((((((((((((((((((.(((((.((.(((.((((((.....)))))))))))))))).)))))))
).)))).))))))))).))))...))).)))))))).....))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATAGTCGATTGGGCTTAGGCCCCGAAGAGATTGACAGAAGAGAGCGAGCACCTGGCGCGGCGACCGGCATGGAACGCATGCCGTCCCCGCCGCGTGCTCG
CTTCTCTTTCTGTCAGCCTCTCCCTCGTCCTGAGCCGACGCCGAT
dot-bracket secondary structure
...((((....((((((((...(((((((.(((((((((((((((((((((.(((((.((.(((.((((((.....)))))))))))))))).)))))))
).)))).))))))))).))))...))).)))))))).....))))
SIMILARITIES| miRBase zma-MIR156k: 2e-65 PMRD zma-miR156k: 2e-65 microPC miR156: 2e-37 | UniProt no hits RFAM mir-156: 5e-35 | most similar mature miRNAs |
Identical with: zma-miR156k from PMRD (MNEST054921) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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