ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIRf1372
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGAGCTTCTCGAAGATGTCG miRNA* GCGTGCTTGGCGAGCTCGCCG mismatches: 3 bulges: 0 |
pre-miRNA
CCGCCTTGGTCCCTTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACCGAGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTT
GTTGTAGCGGGCGAGCTTGGCTGCCTCGGCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGAT
dot-bracket secondary structure
.(((((((...(((((.....(((((.((((...)))).))))).))))).)))))))((((....(((((.....))))).))))...(((((((((((
....((((((.((((...(((((((.....))).)))).))))......))))))...)))))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CCGCCTTGGTCCCTTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACCGAGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTT
GTTGTAGCGGGCGAGCTTGGCTGCCTCGGCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGAT
dot-bracket secondary structure
.(((((((...(((((.....(((((.((((...)))).))))).))))).)))))))((((....(((((.....))))).))))...(((((((((((
....((((((.((((...(((((((.....))).)))).))))......))))))...)))))))))))...
SIMILARITIES| miRBase no hits PMRD osa-miRf10132-akr: 7e-62 microPC no hits | UniProt sp|Q6F362|H2B9_ORYSJ: 1e-17 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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