ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTTGGAACAGAGGGAGTATA miRNA* TACTCCCTCAGTCCCACAATA mismatches: 5 bulges: 0 |
pre-miRNA
CTCATAATATGTACTCCCTCAGTCCCACAATAGAGTTCGTTTTACCACTTGCTATTTGTCTATATTCAAATAAATGGTAATGAATCTAGACACATATACA
TAACACATACACTAATTATTGTATGAATCCAATAAAATATTAAAACAAATTTTAATTTGGAACAGAGGGAGTATACAGTAGTG
dot-bracket secondary structure
.........(((((((((((.((.(((...(((((((.((((((....(((.(((.((((((.(((((............))))).)))))).)))....
.....((((((........))))))....)))........)))))).)))))))...))).)).)))))))))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CTCATAATATGTACTCCCTCAGTCCCACAATAGAGTTCGTTTTACCACTTGCTATTTGTCTATATTCAAATAAATGGTAATGAATCTAGACACATATACA
TAACACATACACTAATTATTGTATGAATCCAATAAAATATTAAAACAAATTTTAATTTGGAACAGAGGGAGTATACAGTAGTG
dot-bracket secondary structure
.........(((((((((((.((.(((...(((((((.((((((....(((.(((.((((((.(((((............))))).)))))).)))....
.....((((((........))))))....)))........)))))).)))))))...))).)).)))))))))))........
SIMILARITIES| miRBase osa-MIR819f: 0.00004 PMRD osa-miR819f: 0.00004 microPC no hits | UniProt no hits RFAM MIR1122: 0.00001 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
