ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR439
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTCGAACCGCGGTTGTTCGA miRNA* GAACTGACGCAGTTCGACATG mismatches: 4 bulges: 0 |
pre-miRNA
TTTTTGGACCACCTACCCTGTCGAACTGACGCAGTTCGACATGTACCTGTCGAACTGTGGTTGTTCGATAGGTATCCCTGTCGAACCGCGGTTGTTCGAC
AGGGTGCTAAACTTGCGA
dot-bracket secondary structure
.....((....)).((((((((((((...(((.((((((((.(((((((((((((.......)))))))))))))...)))))))).)))...)))))))
)))))((.......))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TTTTTGGACCACCTACCCTGTCGAACTGACGCAGTTCGACATGTACCTGTCGAACTGTGGTTGTTCGATAGGTATCCCTGTCGAACCGCGGTTGTTCGAC
AGGGTGCTAAACTTGCGA
dot-bracket secondary structure
.....((....)).((((((((((((...(((.((((((((.(((((((((((((.......)))))))))))))...)))))))).)))...)))))))
)))))((.......))..
SIMILARITIES| miRBase osa-MIR439i: 1e-53 PMRD osa-miR439i: 1e-53 microPC no hits | UniProt no hits RFAM MIR439: 7e-46 | most similar mature miRNAs |
Identical with: osa-miRf10088-akr from PMRD (MNEST049303) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
