ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTGGGACAGAGGTAGTACA miRNA* TACTCCCTCCATCCCAAAATG mismatches: 5 bulges: 0 |
pre-miRNA
CCGATCTACTCCCTCCATCCCAAAATGTAACAACTTTTGAACGGATGGGACACATCCTAGTAATACGAATCTAGATAAGGGCCTGCACAGATTCTTAGTA
CTAGGTTGTCTCATCCATTCAAAAATTGCTATACTTTGGGACAGAGGTAGTACATAA
dot-bracket secondary structure
...((.((((.((((..(((((((.((((.(((.(((((((.((((((((((...(((((((.((.((((((................)))))).)).))
))))).)))))))))).))))))).))).)))).)))))))..)))).)))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCGATCTACTCCCTCCATCCCAAAATGTAACAACTTTTGAACGGATGGGACACATCCTAGTAATACGAATCTAGATAAGGGCCTGCACAGATTCTTAGTA
CTAGGTTGTCTCATCCATTCAAAAATTGCTATACTTTGGGACAGAGGTAGTACATAA
dot-bracket secondary structure
...((.((((.((((..(((((((.((((.(((.(((((((.((((((((((...(((((((.((.((((((................)))))).)).))
))))).)))))))))).))))))).))).)))).)))))))..)))).)))).))..
SIMILARITIES| miRBase no hits PMRD osa-miRf10473-akr: 0.0000001 microPC no hits | UniProt no hits RFAM MIR1122: 1e-17 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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