ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf541
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACCTGTCAGTGACCACGTCC miRNA* AGCGTGGTGACGGACATGTGAG mismatches: 3 bulges: 1 |
pre-miRNA
GACGTTCTGAGGAGCGTGGTGACGGACATGTGAGCCCCACCGCTGGTGGGCCCACCTGTCAGTGACCACGTCCGTGTGCAGT
dot-bracket secondary structure
......(((.(((.((((((.((.((((.(((.((((.(((...))))))).))).)))).)).))))))))).....))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GACGTTCTGAGGAGCGTGGTGACGGACATGTGAGCCCCACCGCTGGTGGGCCCACCTGTCAGTGACCACGTCCGTGTGCAGT
dot-bracket secondary structure
......(((.(((.((((((.((.((((.(((.((((.(((...))))))).))).)))).)).))))))))).....))).
SIMILARITIES| miRBase no hits PMRD osa-miRf11693-akr: 0.0000000003 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
