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ABOUT THIS RECORD

ID: MNEST003830
species: Oryza sativa
miRNA family: MIRf162
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGATTGCAACGTTTGACCAC

miRNA*
 GATCAAAAATTGTAAGAAAA

mismatches: 4
bulges: 1
View larger
pre-miRNA
 TCCGTTCCACAATATAAGGGATTTTGAGTTTTTGATTGCAACGTTTGACCACTCGTCTTATTTAAATTTTTTTTGCAAATATAAAAAACAAAAAGTTGTG
GTTAAAATACTGTAGATAATAAAGTAAGTCACAAATAAAATAAATAATAATTTTAAAAAAGTTTAAATAAGACGAGTGATCAAAAATTGTAAGAAAAACT
CAAAATCCCCTTATATTAAGTTAGT

dot-bracket secondary structure
..........(((((((((((((((((((((((..((((((..(((((.((((((((((((((((((((((((...((((...............(((((
(((....((((.((.....)).))))))))))))...............)))).)))))))))))))))))))))))).)))))..)))))).)))))))
)))))).))))))))))........


SIMILARITIES
miRBase osa-MIR818e: 3e-18

PMRD osa-miR818e: 3e-18

microPC miR818: 8e-16		UniProt no hits

RFAM MIR806: 7e-23		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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