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ABOUT THIS RECORD

ID: MNEST003865
species: Oryza sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCTAACATTTCCCACATTCA

miRNA*
 AATGTGAGAAATGCAAGAATG

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TAAATAGATCTGTGTGAGCATGAATTGCGTTGCTACTCCCTCTTTTTCACAATGTAAGTCATTCTAACATTTCCCACATTCATATTGATGTTGATAAATC
TACACATATATATCTATCTAGATTCATTAAATCAATATGAATGTGAGAAATGCAAGAATGAATTACATTATGAAACGGAGGAAGTACTACATAAGACATA
CTAGCAGACTAGCTTACC

dot-bracket secondary structure
....(((.(((((...((.(((..(((.((...((((.(((((.(((((.(((((((.(((((((..((((((.(((((((((((((((.(((((.((((
((................)))))).)))))))))))))))))))).))))))..))))))).))))))).))))).))))).))))..)).)))..))).
)).)))))))).......


SIMILARITIES
miRBase osa-MIR808: 1e-51

PMRD osa-miR808: 1e-51

microPC miR809: 3e-21		UniProt no hits

RFAM MIR1122: 1e-51		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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