ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGACAATGCTAGAAAGTCTT miRNA* GACTTTATGGCATTGCCCACA mismatches: 2 bulges: 0 |
pre-miRNA
GAATGCAGTACCGTAGTTACAATATAGGACTTCCTCCGTTTTCATATTGTAAGACTTTATGGCATTGCCCACATCTATATAAATGTGGACAATGCTAGAA
AGTCTTATAATATGAAACGGAGGGGTTATTACATATGTAATTATATTACAATTAT
dot-bracket secondary structure
.......(((..(((((((((((.(((...(((((((((((.((((((((((((((((.((((((((.((((((........)))))).)))))))).))
)))))))))))))))))))))))))...))).)).)))))))))..)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAATGCAGTACCGTAGTTACAATATAGGACTTCCTCCGTTTTCATATTGTAAGACTTTATGGCATTGCCCACATCTATATAAATGTGGACAATGCTAGAA
AGTCTTATAATATGAAACGGAGGGGTTATTACATATGTAATTATATTACAATTAT
dot-bracket secondary structure
.......(((..(((((((((((.(((...(((((((((((.((((((((((((((((.((((((((.((((((........)))))).)))))))).))
)))))))))))))))))))))))))...))).)).)))))))))..)))......
SIMILARITIES| miRBase osa-MIR819a: 6e-19 PMRD osa-miR819a: 6e-19 microPC miR1130: 6e-16 | UniProt no hits RFAM MIR1122: 1e-26 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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