ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf1452
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAGGTTTGTAGCTAGAATT miRNA* ACTTTAGCTATGAATCTAGACA mismatches: 2 bulges: 1 |
pre-miRNA
GAGCTTAGCTAGATGGTACTACTCTGTCCCATAAAAAAACAAACTTTAGCTATGAATCTAGACACGCATATGTCCAGGTTTGTAGCTAGAATTGTTTTTT
TTTTTACGGAGGGGTAGCTGCTAGCACCAGTT
dot-bracket secondary structure
.......(((((.(((((((.((((((.....((((((((((..(((((((((((((((.((((......)))).))))))))))))))).)))))))))
)....)))))).)))).)))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGCTTAGCTAGATGGTACTACTCTGTCCCATAAAAAAACAAACTTTAGCTATGAATCTAGACACGCATATGTCCAGGTTTGTAGCTAGAATTGTTTTTT
TTTTTACGGAGGGGTAGCTGCTAGCACCAGTT
dot-bracket secondary structure
.......(((((.(((((((.((((((.....((((((((((..(((((((((((((((.((((......)))).))))))))))))))).)))))))))
)....)))))).)))).)))))))).......
SIMILARITIES| miRBase osa-MIR1439: 0.0004 PMRD osa-miR1439: 0.0004 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
