miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST003924
species: Oryza sativa
miRNA family: MIR1884
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGACGCCGTTGACTTTTGT

miRNA*
 AAAAGTCAACAGCGTCAAACA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TACTCCCTTTATCCCGAAATGTTTGACGCCGTTGACTTTTGTAAAAATATTTGACTGTTCGTCTTATTTAAAAAAATTTAAATAATAATTAATTCTTTTC
CTATCATTTGATTTATTGTTAAATATACTTTTATATATGCATATAGTTTTACATATTTCACAAAAGTTTTTGAATAAGACAAATGGTTAAACATACTTTA
AAAAGTCAACAGCGTCAAACATTTAGGGAAGTAAGGAAT

dot-bracket secondary structure
.....((((..((((.(((((((((((((.((((((((((..((..((.((((((((((.((((((((((((((((.((((((.(((.............
.))).)))))).)).((((.((((((....((((((....))))))......)))))).))))...)))))))))))))).)))))))))).))..))..
)))))))))).))))))))))))).))))...))))...


SIMILARITIES
miRBase osa-MIR806h: 8e-44

PMRD oru-miR806: 1e-57

microPC miR806: 7e-32		UniProt no hits

RFAM MIR806: 1e-113		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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