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ABOUT THIS RECORD
ID:
MNEST003927
species:
Oryza sativa
miRNA family:
MIRf542
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGACCCACATGCCAGTGACAC
miRNA*
GCCAATGACATGTGGGCCCG
mismatches:
3
bulges:
1
View larger
pre-miRNA
TGTGCGGTAAGT
GCCAATGACATGTGGGCCCG
GAATAGGTG
GGACCCACATGCCAGTGACAC
CAGTACAGC
dot-bracket secondary structure
(((((.....((
(.((.((.((((((((((((
.......))
)).)))))))).)).)).)))
..)))))..
SIMILARITIES
miRBase
no hits
PMRD
osa-miRf10338-akr
:
0.00000005
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record