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ABOUT THIS RECORD

ID: MNEST003940
species: Oryza sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TACTTCCTCCGTTTCATATTA

miRNA*
 ATATGAAACGGAGGGAGTATT

mismatches: 0
bulges: 0
View larger
pre-miRNA
 TGCATAAGATATACTTCCTCCGTTTCATATTATAATACTATCTATTATTGCCCACATTCATATATATGTCTAGATTCATTAGCATCTATATGAATGTGGG
CAATGATAGAAAGTCTTATAATATGAAACGGAGGGAGTATTATCTTG

dot-bracket secondary structure
....(((((((((((((((((((((((((((((((.(((.((((((((((((((((((((((((.(((.((((.....))))))).))))))))))))))
)))))))))).))).)))))))))))))))))))))))).)))))))


SIMILARITIES
miRBase osa-MIR819e: 2e-31

PMRD osa-miR819e: 2e-31

microPC miR819: 1e-16		UniProt no hits

RFAM MIR1122: 1e-54		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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