ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR812
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACGGACGGTCAAACGTTGGA miRNA* CAACGTTTCACCGTTCGTCTT mismatches: 2 bulges: 0 |
pre-miRNA
ACTATTCATATCCAACGTTTCACCGTTCGTCTTATTTGAATTTTTTTTATGATTACTATTTTTATTGTTATTAGATGATAAAACATGAATAGAACTTTAT
GTGTGACTATTTTTTTAAAAAAAATTCATAAAATTTTCAAATAAAACGGACGGTCAAACGTTGGACACGGATTT
dot-bracket secondary structure
..........((((((((((.(((((((((.(((((((((....((((((((.....((((((.(((.....(((((.((..(((((((......)))))
)).))..)))))...))).))))))))))))))..))))))))).))))))))).)))))))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACTATTCATATCCAACGTTTCACCGTTCGTCTTATTTGAATTTTTTTTATGATTACTATTTTTATTGTTATTAGATGATAAAACATGAATAGAACTTTAT
GTGTGACTATTTTTTTAAAAAAAATTCATAAAATTTTCAAATAAAACGGACGGTCAAACGTTGGACACGGATTT
dot-bracket secondary structure
..........((((((((((.(((((((((.(((((((((....((((((((.....((((((.(((.....(((((.((..(((((((......)))))
)).))..)))))...))).))))))))))))))..))))))))).))))))))).)))))))))).........
SIMILARITIES| miRBase osa-MIR812a: 5e-41 PMRD osa-miR812a: 5e-41 microPC miR812: 0.00000000004 | UniProt no hits RFAM MIR812: 7e-44 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
