ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf1641
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTTGCGTCGTAAGCCGGCTT miRNA* GCTGGCTTCTAGCGTAAGCTT mismatches: 3 bulges: 0 |
pre-miRNA
TGGACCTTCTGGCTTGCGTCGTAAGCCGGCTTACGTCGTAAGCTGGCTTCTCTTGTAAGCTGGCTTCCTCTATAAGCTGGCTTACGCCGTAAGCTGGCTT
CCTTTGTAAGCTGGCTTCTAGCGTAAGCTTCTCCTGGA
dot-bracket secondary structure
.(((......(((((((((...(((((((((((((....((((((((((....(((((((((((((.......)))))))))))))....))))))))))
....)))))))))))))...)))))))))..)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
TGGACCTTCTGGCTTGCGTCGTAAGCCGGCTTACGTCGTAAGCTGGCTTCTCTTGTAAGCTGGCTTCCTCTATAAGCTGGCTTACGCCGTAAGCTGGCTT
CCTTTGTAAGCTGGCTTCTAGCGTAAGCTTCTCCTGGA
dot-bracket secondary structure
.(((......(((((((((...(((((((((((((....((((((((((....(((((((((((((.......)))))))))))))....))))))))))
....)))))))))))))...)))))))))..)))....
SIMILARITIES| miRBase no hits PMRD osa-miRf11715-akr: 8e-21 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
