ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR811
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCGTTAGATCGAGAAATAAA miRNA* TATTATTTAATCTAACGGTAG mismatches: 3 bulges: 0 |
pre-miRNA
ACCATATATGTTGTGGAAACTACCGTTAGATCGAGAAATAAATGTTCGAGAATCATCCACGTTATCACGCACAGTAAAATTTTTACTCACGAGTAAATCT
GTGAGTAAAATTTTTACTCGTGATGACGTGAACAAATCTCAAGCGTCTATTATTTAATCTAACGGTAGTTTTCAAGTTTCCATCGT
dot-bracket secondary structure
.............((((((((((((((((((.(((.((((.(((((.((((......((((((((((((...(((((((.((((((((((((.....)).
)))))))))).)))))))))))))))))))......)))).))))).)))).))).))))))))))))))))))............
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACCATATATGTTGTGGAAACTACCGTTAGATCGAGAAATAAATGTTCGAGAATCATCCACGTTATCACGCACAGTAAAATTTTTACTCACGAGTAAATCT
GTGAGTAAAATTTTTACTCGTGATGACGTGAACAAATCTCAAGCGTCTATTATTTAATCTAACGGTAGTTTTCAAGTTTCCATCGT
dot-bracket secondary structure
.............((((((((((((((((((.(((.((((.(((((.((((......((((((((((((...(((((((.((((((((((((.....)).
)))))))))).)))))))))))))))))))......)))).))))).)))).))).))))))))))))))))))............
SIMILARITIES| miRBase osa-MIR2862: 3e-21 PMRD osa-miR2862: 3e-21 microPC no hits | UniProt no hits RFAM MIR811: 2e-22 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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