ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGAGAGTNAGCAC miRNA* GCTCGCTCCTCTTTCTGTCAGCA mismatches: 2 bulges: 2 |
pre-miRNA
AGCATATGAAAGGCGAGATTGTTGACAGAAGAGAGTNAGCACACGGCGCGGCGGCTAGCCATCGGGGNGATGCCTGCCCCNGCCGCGTGCTCGCTCCTCT
TTCTGTCAGCATCTCTCATCANTCCCTCC
dot-bracket secondary structure
.......((..((.((((.((((((((((((.((((.(((((.((((..((.(((.((.((((.....)))).))))))).)))).))))).))))...)
)))))))))))..)))).))..)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
AGCATATGAAAGGCGAGATTGTTGACAGAAGAGAGTNAGCACACGGCGCGGCGGCTAGCCATCGGGGNGATGCCTGCCCCNGCCGCGTGCTCGCTCCTCT
TTCTGTCAGCATCTCTCATCANTCCCTCC
dot-bracket secondary structure
.......((..((.((((.((((((((((((.((((.(((((.((((..((.(((.((.((((.....)))).))))))).)))).))))).))))...)
)))))))))))..)))).))..)).....
SIMILARITIES| miRBase osa-MIR156j: 1e-59 PMRD osa-miR156j: 1e-59 microPC miR156: 3e-32 | UniProt no hits RFAM mir-156: 1e-35 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
