ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGACTTTCTAGCATTATCA miRNA* ACACATACTAGAAAGTCTTATA mismatches: 4 bulges: 1 |
pre-miRNA
AGGAGATTACTACTTCCTCCGTATCATATTATAAGACTTTCTAGCATTATCACATATTCATATATATTTAATGAATCTAAACATATATGTGTCTATATTC
ATTAACATCTATATAAATATGGACACATACTAGAAAGTCTTATAATCTGAAACCGAGGTAGTAGAAAATAGA
dot-bracket secondary structure
.........(((((.((((.((.(((.(((((((((((((((((.((..((.((((((.(((((.(((((((((((.((.((((....)))).)).))))
))))).)).))))).))))))))...)).))))))))))))))))).))).)).)))).)))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGGAGATTACTACTTCCTCCGTATCATATTATAAGACTTTCTAGCATTATCACATATTCATATATATTTAATGAATCTAAACATATATGTGTCTATATTC
ATTAACATCTATATAAATATGGACACATACTAGAAAGTCTTATAATCTGAAACCGAGGTAGTAGAAAATAGA
dot-bracket secondary structure
.........(((((.((((.((.(((.(((((((((((((((((.((..((.((((((.(((((.(((((((((((.((.((((....)))).)).))))
))))).)).))))).))))))))...)).))))))))))))))))).))).)).)))).)))))........
SIMILARITIES| miRBase osa-MIR819b: 8e-37 PMRD osa-miR819b: 8e-37 microPC miR819: 2e-46 | UniProt no hits RFAM MIR1122: 8e-25 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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