ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGACTTTCTAGCATTATCC miRNA* ACNATACTAGAAAGTCTTATA mismatches: 3 bulges: 0 |
pre-miRNA
AGGAGATTACTACTTCCTCCGTATCATATTATAAGACTTTCTAGCATTATCCATATTCATATATATGTTAATGAATCTAAACATATATGTGTCTATATTC
ATTAACATCTATATAAATATGGACNATACTAGAAAGTCTTATAATCTGAAACGGAGGTAGTAGAAAATAGA
dot-bracket secondary structure
.........(((((.(((((((.(((.(((((((((((((((((.((..((((((((.(((((.((((((((((((.((.((((....)))).)).))))
)))))))).))))).))))))))..)).))))))))))))))))).))).))))))).)))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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AGGAGATTACTACTTCCTCCGTATCATATTATAAGACTTTCTAGCATTATCCATATTCATATATATGTTAATGAATCTAAACATATATGTGTCTATATTC
ATTAACATCTATATAAATATGGACNATACTAGAAAGTCTTATAATCTGAAACGGAGGTAGTAGAAAATAGA
dot-bracket secondary structure
.........(((((.(((((((.(((.(((((((((((((((((.((..((((((((.(((((.((((((((((((.((.((((....)))).)).))))
)))))))).))))).))))))))..)).))))))))))))))))).))).))))))).)))))........
SIMILARITIES| miRBase osa-MIR819b: 4e-48 PMRD osa-miR819b: 4e-48 microPC miR819: 2e-59 | UniProt no hits RFAM MIR1122: 2e-38 | most similar mature miRNAs |
Identical with: miR819 from microPC (MNEST045260) |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
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