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ABOUT THIS RECORD

ID: MNEST003970
species: Oryza sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAAGACTTTNTAGCATTGTCT

miRNA*
 ATAATGCTAGAAAGTCTTATA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TCCTACATGTTACTATATCCGTTTCAGGTTACAAGACTTTNTAGCATTGTCTACATTCATATAGATGTTAATGAATCCAGGATATATATATATATATATA
TATATATATATATATATATATATATGTAGATTCATTAACATATATATATAAATATGGATAATGCTAGAAAGTCTTATAATATGAAATGGGAAGTATT

dot-bracket secondary structure
..........((((...(((((((((.((((.((((((((.((((((((((((.(((.(((((.(((((((((((((....(((((((((((((((((((
((....))))))))))))))))))))).)))))))))))))...))))).))).)))))))))))).)))))))).)))).))))))))).))))..


SIMILARITIES
miRBase osa-MIR819j: 3e-21

PMRD osa-miR819j: 3e-21

microPC miR819: 0.000000003		UniProt no hits

RFAM MIR1122: 8e-16		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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