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ABOUT THIS RECORD
ID:
MNEST003971
species:
Oryza sativa
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAAGACTTTATAGCATTGTCC
miRNA*
GTAATGCTAGAAAGTCTTATG
mismatches:
1
bulges:
0
View larger
pre-miRNA
ATTTCAGGCTA
TAAGACTTTATAGCATTGTCC
ACATTCATATAGATGCTAATGAATCTAGGCACATATATGTTTAGATTCATATGG
GTAATGCTAGAAAG
TCTTATG
ATATGAAA
dot-bracket secondary structure
.(((((...((
(((((((((.(((((((((((
(((((......))))...(((((((((((((......))))))))))))).)))
))))))))).))))
)))))))
...)))))
SIMILARITIES
miRBase
osa-MIR819e
:
3e-23
PMRD
osa-miR819e
:
3e-23
microPC
miR1130
:
7e-18
UniProt
no hits
RFAM
MIR1122: 1e-19
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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