ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGACTTTCTAGCATTATCA miRNA* ATAATACTAGAAAGTTTTATA mismatches: 2 bulges: 0 |
pre-miRNA
CCTCCGTATCATATTATAAGACTTTCTAGCATTATCAATATTCATATATATGTTAATGAATCTAAACATATATGTGTGTCTATATTCATTAACATCTATA
TAAATATGGATAATACTAGAAAGTTTTATAATCTGAAACGGAG
dot-bracket secondary structure
.((((((.(((.(((((((((((((((((.((((((.(((((.(((((.((((((((((((.((.(((((....))))).)).)))))))))))).))))
).))))).)))))).))))))))))))))))).))).))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CCTCCGTATCATATTATAAGACTTTCTAGCATTATCAATATTCATATATATGTTAATGAATCTAAACATATATGTGTGTCTATATTCATTAACATCTATA
TAAATATGGATAATACTAGAAAGTTTTATAATCTGAAACGGAG
dot-bracket secondary structure
.((((((.(((.(((((((((((((((((.((((((.(((((.(((((.((((((((((((.((.(((((....))))).)).)))))))))))).))))
).))))).)))))).))))))))))))))))).))).))))))
SIMILARITIES| miRBase osa-MIR819b: 8e-49 PMRD osa-miR819b: 8e-49 microPC miR819: 5e-47 | UniProt no hits RFAM MIR1122: 3e-33 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
