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ABOUT THIS RECORD

ID: MNEST003975
species: Oryza sativa
miRNA family: MIRf1212
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGCAACTCTCCTTTGGCAGGC

miRNA*
CTGCCAGAGGAGAGCTGCCTA

mismatches: 2
bulges: 0

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pre-miRNA
AAAACACTATCTAAATAACTTCGAGTTAAAGACAGTCGCAGGGCAACTCTCCTTTGGCAGGCCGTTTTGGTGAATTCAATCGCTACATGGCGATCGATCA
AAGCTAGTAGCAGCTGGTATATACATACATGCACATAACCAACCGATATATGATGGTCTATCAAAGGCCACCATGTATATATATACACAATGCAATCACA
TATGGATGATTGCAATGTAGCACCATGGCCGGACTGTATATACCTTGGATGCATATACAATTACAAAATCACCTAGAATGCACCTGCCAGAGGAGAGCTG
CCTA
CTACTGTCTTCAACTAGTTCTTGCACCTCTCTCACATC


dot-bracket secondary structure
.............((.((((...((((.((((((((....(((((.(((((((((((((((.(((((((((((..((.((((((....)))))).))...
.((((......)))).(((((((.(((((((..((((...........)))).((((((.....)))))).))))))).)))))))(((.((((((((..
......)))))))).))).((......))..((.(((((((...........))))))).))......))))).))))))..))))))))))))))).))
))).
..)))))))).)))))))).))................



SIMILARITIES
miRBase osa-MIR399d: 2e-162

PMRD osa-miR399d: 2e-162

microPC miR399: 0.0003
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: osa-MIR399d from miRBase (MNEST042044)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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