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ABOUT THIS RECORD
ID:
MNEST003977
species:
Oryza sativa
miRNA family:
MIRf10
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATTCGTCTCGCGGTTTACATA
miRNA*
TGTAAATTATGAGACGAATCT
mismatches:
2
bulges:
0
View larger
pre-miRNA
AGAGAGGGGGGGTTCGAGCGCANTGTCACATATTTACAGAGTATTAACATCTATATGAAAGAGAGAGTATAAACGGAAAAATGATTAATTACGCGGATTG
CG
TGTAAATTATGAGACGAATCT
TTTAAGCCTANATACGCCATGATTTGATGATGTTGTGCTACAGTAAACATTTGCTAATGACGGATTAATTAGGCTTA
ATAA
ATTCGTCTCGCGGTTTACATA
CGGATTTTGTAATTTGTTTTGTTATTAGACTACGTTTAATATTCAAATGTGTGCCCGTATATCCGATGTGACACG
CCAAAACTTTACACCCCTAATCTA
dot-bracket secondary structure
(((.(((((..((..(((.((..((((((((...(((...((((..((((((.........)))(((((((((((.((.(((((..(((((((.((.(((
.(
((((((((.((((((((((..
.(((((((((..((..((.....(((..((((((...........))))))...)))....))..))..))))))))
)...
)))))))))).))))))))).
))).)).)))))))....))))).))......))))).))))))...)))))))..)))......)))))))).)
).....))).)).)))))..))).
SIMILARITIES
miRBase
osa-MIR442
:
1e-58
PMRD
osa-miR442
:
1e-58
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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