ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf528
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTATTAGGAAATGTCACATTC miRNA* ATGTAACATTTTCTACTACAA mismatches: 2 bulges: 0 |
pre-miRNA
TTTTTCCTTTACACCTACTCCATCCGTTCCGAAAAAACGAACCTAGACACGGATGTAACATTTTCTACTACAATGAATCTAGACATGAGCCTGTCCAGAT
TCATTGTATTAGGAAATGTCACATTCACATCTAGATTTGTTTTTTTATGGGATGGAGGGAGTATGTATGAGTCTT
dot-bracket secondary structure
.......((((.((.((((((.(((((((((((((((((((.(((((...((((((.((((((((((.((((((((((((.((((......)))).))))
)))))))).)))))))))).))))))...))))).))))))))))..))))))))).)))))).)).))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTTTCCTTTACACCTACTCCATCCGTTCCGAAAAAACGAACCTAGACACGGATGTAACATTTTCTACTACAATGAATCTAGACATGAGCCTGTCCAGAT
TCATTGTATTAGGAAATGTCACATTCACATCTAGATTTGTTTTTTTATGGGATGGAGGGAGTATGTATGAGTCTT
dot-bracket secondary structure
.......((((.((.((((((.(((((((((((((((((((.(((((...((((((.((((((((((.((((((((((((.((((......)))).))))
)))))))).)))))))))).))))))...))))).))))))))))..))))))))).)))))).)).))))....
SIMILARITIES| miRBase osa-MIR818a: 0.0001 PMRD osa-miR818a: 0.0001 microPC no hits | UniProt no hits RFAM MIR1122: 0.0000000000007 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
