ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR531
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCGCCGGGGCTGCGTGCCG miRNA* GGTGCGCATCCCCGTCGAGCG mismatches: 2 bulges: 1 |
pre-miRNA
GACGGGGTGGAGGTGGCGCCGCCGAGCCTTGCTCGCCGGGGCTGCGTGCCGCCATAGCTGGTGCGCATCCCCGTCGAGCGTTGCTCGACGGTGCCCTAAG
CACCCGCC
dot-bracket secondary structure
....(((((..((.(((((((.(((((..((((((.(((((.((((((((((....)).)))))))).))))).))))))..))))).)))))))))...
)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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GACGGGGTGGAGGTGGCGCCGCCGAGCCTTGCTCGCCGGGGCTGCGTGCCGCCATAGCTGGTGCGCATCCCCGTCGAGCGTTGCTCGACGGTGCCCTAAG
CACCCGCC
dot-bracket secondary structure
....(((((..((.(((((((.(((((..((((((.(((((.((((((((((....)).)))))))).))))).))))))..))))).)))))))))...
)))))...
SIMILARITIES| miRBase osa-MIR531: 3e-38 PMRD osa-miR531: 3e-38 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: osa-miR531b from PMRD (MNEST049022) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
