ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTCTTATATCCTGAAACGGAA miRNA* CCGTTTCATATTATAAAACTT mismatches: 5 bulges: 0 |
pre-miRNA
TAGATCCTTCCTCCGTTTCATATTATAAAACTTTTTACCATTGTCCTTTTTAATGAATCTAAACATATATTTGTCCTTAAATTCATTAACATCTATATGA
ATGGGAGCAATATTAAAAAGTCTTATATCCTGAAACGGAAAACGGGGGT
dot-bracket secondary structure
...((((((..(((((((((...(((((.((((((((..((((((((..(((((((((.((((((......)))..))).)))))))))..((.....))
..)))).))))..)))))))).)))))...)))))))))....))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TAGATCCTTCCTCCGTTTCATATTATAAAACTTTTTACCATTGTCCTTTTTAATGAATCTAAACATATATTTGTCCTTAAATTCATTAACATCTATATGA
ATGGGAGCAATATTAAAAAGTCTTATATCCTGAAACGGAAAACGGGGGT
dot-bracket secondary structure
...((((((..(((((((((...(((((.((((((((..((((((((..(((((((((.((((((......)))..))).)))))))))..((.....))
..)))).))))..)))))))).)))))...)))))))))....))))))
SIMILARITIES| miRBase osa-MIR819g: 1e-19 PMRD osa-miR819g: 1e-19 microPC miR1120: 0.000000000002 | UniProt no hits RFAM MIR1122: 0.0000000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
