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ABOUT THIS RECORD

ID: MNEST004019
species: Oryza sativa
miRNA family: MIR1122
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TACTCCCTCCGTCCAAAAAGT

miRNA*
 TTTTATGGGACGGAGGGANTGGT

mismatches: 3
bulges: 2
View larger
pre-miRNA
 TGGATATGTTCTACTCCCTCCGTCCAAAAAGTGAATGTAGCTCTGTATGGGACACATTATAGTACAACGAATCTGGATAGAAATATGTCTAGATTCGTAG
TACTAGGATGTGTCGCATCGAGTGTTGGTTTTTTATGGGACGGAGGGANTGGTAATTACTG

dot-bracket secondary structure
.((..((...(((.(((((((((((.(((((....((..((((...(((.((((((((.((((((.(((((((((((((......))))))))))))).)
))))).)))))))).))).))))..))..)))))...))))))))))).)))..))..)).


SIMILARITIES
miRBase osa-MIR814b: 0.0005

PMRD osa-miRf10473-akr: 0.0000001

microPC miR1436: 2e-58		UniProt no hits

RFAM MIR1122: 1e-23		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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