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ABOUT THIS RECORD

ID: MNEST004020
species: Oryza sativa
miRNA family: MIR1122
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TACTCCCTCCGTCCAAAAAGT

miRNA*
 TTTATGGACGGAGNGGAGTGGT

mismatches: 3
bulges: 1
View larger
pre-miRNA
 TGGATATGGTCTACTCCCTCCGTCCAAAAAGTGAATCTAGCTCTGTATGTGACACATTATAGTACAACGAATCTGGATAGAAATATGTCTAGATTCGTAG
TACTAGGATGTGTCGCATCGAGTGTTGGTTTTTTATGGACGGAGNGGAGTGGTAATTACTG

dot-bracket secondary structure
.((..((...((((((((((((((((.(((..(((((..((((...((((((((((((.((((((.(((((((((((((......))))))))))))).)
))))).)))))))))))).))))...)))))))).))))))))).)))))))..))..)).


SIMILARITIES
miRBase osa-MIR814c: 0.000008

PMRD osa-miRf10473-akr: 0.0000001

microPC miR1436: 4e-57		UniProt no hits

RFAM MIR1122: 4e-20		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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