ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf528
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTAGGATGTGTTACATCT miRNA* ATGTGACACATTATAGTACAA mismatches: 2 bulges: 0 |
pre-miRNA
AAAAACGAATCTAGGACGGGATGTGACACATTATAGTACAATGAATCTGGACAAAGGTATGTCCAGATTCGTAATACTAGGATGTGTTACATCTAGTATT
AGGTTGATTTC
dot-bracket secondary structure
.......(((((((.((.((((((((((((((.(((((..(((((((((((((......)))))))))))))..))))).)))))))))))))).)).))
)))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
AAAAACGAATCTAGGACGGGATGTGACACATTATAGTACAATGAATCTGGACAAAGGTATGTCCAGATTCGTAATACTAGGATGTGTTACATCTAGTATT
AGGTTGATTTC
dot-bracket secondary structure
.......(((((((.((.((((((((((((((.(((((..(((((((((((((......)))))))))))))..))))).)))))))))))))).)).))
)))))......
SIMILARITIES| miRBase osa-MIR818a: 0.00000002 PMRD osa-miR818a: 0.00000002 microPC miR1436: 0.00000000002 | UniProt no hits RFAM MIR1122: 1e-37 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
