ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGGGACAGAGGGAGTATG miRNA* TACTCACTCTGTTCCAAAATA mismatches: 1 bulges: 0 |
pre-miRNA
CTTGCTTAACATATACTCACTCTGTTCCAAAATAAACCAACATTGTACGGATGTGCCACATCCTAATACATCTTGGACACAAGTACTAGTATGTGTCACA
TCGGGTTTATTTTGGGACAGAGGGAGTATGTAACATATAT
dot-bracket secondary structure
..........((((((((.(((((((((((((((((((.((...))...((((((.(((((.(((.(((...(((....)))))).))).))))).))))
)).))))))))))))))))))).)))))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTGCTTAACATATACTCACTCTGTTCCAAAATAAACCAACATTGTACGGATGTGCCACATCCTAATACATCTTGGACACAAGTACTAGTATGTGTCACA
TCGGGTTTATTTTGGGACAGAGGGAGTATGTAACATATAT
dot-bracket secondary structure
..........((((((((.(((((((((((((((((((.((...))...((((((.(((((.(((.(((...(((....)))))).))).))))).))))
)).))))))))))))))))))).)))))))).........
SIMILARITIES| miRBase osa-MIR1862d: 0.000002 PMRD osa-miRf11090-akr: 0.0000001 microPC no hits | UniProt no hits RFAM MIR1122: 1e-63 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
