ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAAGTTGTTCTTGGCTACA mismatches: 1 bulges: 0 |
pre-miRNA
GAATCGCCGGCGGCCTGACATTGGGATCGGAGGCCATGGTGCAGCCAAGGATGACTTGCCGATCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGAT
CCATCCATCAATTGGCAAGTTGTTCTTGGCTACATCTTGGCCCCTGCTCCTCATGTAAGGCCGGCCTGTGGC
dot-bracket secondary structure
...((((.((((((((.((((.((((.(((.(((((.((((.(((((((((((((((((((((.(((..(((((((.(((((...)))))...)))))))
......))).))))))))))))))))))))).)))).))))).))).)))).)))).))))).))).)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
GAATCGCCGGCGGCCTGACATTGGGATCGGAGGCCATGGTGCAGCCAAGGATGACTTGCCGATCGATCTATCTATGAAGCTAAGCTAGCTGGCCATGGAT
CCATCCATCAATTGGCAAGTTGTTCTTGGCTACATCTTGGCCCCTGCTCCTCATGTAAGGCCGGCCTGTGGC
dot-bracket secondary structure
...((((.((((((((.((((.((((.(((.(((((.((((.(((((((((((((((((((((.(((..(((((((.(((((...)))))...)))))))
......))).))))))))))))))))))))).)))).))))).))).)))).)))).))))).))).)))).
SIMILARITIES| miRBase osa-MIR169a: 1e-84 PMRD osa-miR169a: 1e-84 microPC miR169: 5e-38 | UniProt no hits RFAM MIR169_2: 1e-51 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
