ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: miR169j
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCAGTCTCCTTGGCTAGCCT miRNA* GATAGCCAAGGATGACTTGCCTG mismatches: 4 bulges: 2 |
pre-miRNA
TTATCTCTGATAGCCAAGGATGACTTGCCTGTGTCCTCCCTGAAGGATTAGCAATTTAATGATCCTTTAAGCTGGTTCATGGGCAGTCTCCTTGGCTAGC
CTGAGTG
dot-bracket secondary structure
....(((...((((((((((.((((.(((((((.((....((((((((((.........))))))))))....))..)))))))))))))))))))))..
..)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTATCTCTGATAGCCAAGGATGACTTGCCTGTGTCCTCCCTGAAGGATTAGCAATTTAATGATCCTTTAAGCTGGTTCATGGGCAGTCTCCTTGGCTAGC
CTGAGTG
dot-bracket secondary structure
....(((...((((((((((.((((.(((((((.((....((((((((((.........))))))))))....))..)))))))))))))))))))))..
..)))..
SIMILARITIES| miRBase osa-MIR169q: 4e-56 PMRD osa-miR169q: 4e-56 microPC miR169: 1e-43 | UniProt no hits RFAM MIR169_5: 7e-55 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST046089) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
