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ABOUT THIS RECORD

ID: MNEST004035
species: Oryza sativa
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGCCAAGGATGACTTGCCTG

miRNA*
 GGCAGTCTCCTTGGCTAGC

mismatches: 0
bulges: 2
View larger
pre-miRNA
 TTTTTGTACTAAGAGAGCAAGGCTTACATGGAGACAAGGGTTTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTCCTTGTGTGTAAGGATCATTAATTA
TTATTCAGAAAATGATCCTTTCAGCAGGTTTCATGGGCAGTCTCCTTGGCTAGCCTGAGTGATTCTTGTCACTTATGCTAGGCTTGCATCTCTCCTTCAT
CT

dot-bracket secondary structure
...........((((((((((.(((((((((.((((((((((..((((.((((((((((((.((((.(((((((..(((((....((((((((((.....
..........))))))))))...)))))...))))))))))))))))))))).)).))))))))))))))..))))).))))))))).))))).......
..


SIMILARITIES
miRBase osa-MIR169h: 9e-65

PMRD osa-miR169h: 9e-65

microPC miR169: 0.00000000004		UniProt no hits

RFAM MIR169_5: 7e-75		most similar mature miRNAs

Identical with: osa-miR169h from PMRD (MNEST048883)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence




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