ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: miR169g
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGCAAGTTGTCCTTGGCT miRNA* CCAAGGATGACTTGCCGGTAC mismatches: 1 bulges: 0 |
pre-miRNA
GAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATA
TGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTT
GCATTTA
dot-bracket secondary structure
..((...((((((((((((((...(((((...((((.(((((((((.(((.((((((((((((((((((((...((((..(((((..((..(((((....
.)))))...((.....)).))..)))))..))))...)))))))))))))))))))).))).))))))))).)))))))))...)))))))).)))))).
)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGTTATGGCTATCAGTGGCCACTCGTGAAATGAGATAGAGAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATA
TGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTCCTTGGCTACGTCTTGTTCTTTTTCTCTCACGTGAGGCCATTGCATGGTTT
GCATTTA
dot-bracket secondary structure
..((...((((((((((((((...(((((...((((.(((((((((.(((.((((((((((((((((((((...((((..(((((..((..(((((....
.)))))...((.....)).))..)))))..))))...)))))))))))))))))))).))).))))))))).)))))))))...)))))))).)))))).
)).....
SIMILARITIES| miRBase osa-MIR169b: 2e-68 PMRD osa-miR169b: 2e-68 microPC miR169: 8e-56 | UniProt no hits RFAM MIR169_2: 2e-69 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST045343) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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