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ABOUT THIS RECORD
ID:
MNEST004085
species:
Oryza sativa
miRNA family:
MIRf10
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACTCAATAGATTCGTCTCGCG
miRNA*
CGAGACAAATTTTTAAGCCT
mismatches:
3
bulges:
1
View larger
pre-miRNA
ATTTAGACACTAATTTAGAGTATTAGATATAGACTACTTACAAAACTAATTACATAAATGAAAGCTAATTCG
CGAGACAAATTTTTAAGCCT
AATTAATC
CATAATTAGAGAATGTTTACTGTAGCATCACATAGGCTAATTATGGATTAATTAG
ACTCAATAGATTCGTCTCGCG
AATTAGTCTAAGATTATGAATGGG
TTTTATTAATAGTCTACGTTTAATATTTGTAATTAGTGTCCAAAC
dot-bracket secondary structure
.(((.((((((((((..(((((((((((.(((((((.....((((((.(((.(((((......(((((((((
((((((.(((((((.((.((
((((((((
(((((((((...((((.............))))...)))))))))))))))))))
.)).)).))))).))))))))
)))))))......)))))))).))
)))).....))))))).)))))))))))..)))))))))).))).
SIMILARITIES
miRBase
osa-MIR445d
:
9e-53
PMRD
osa-miR445d
:
9e-53
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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