ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATATACTCCCTCCGTCCCAA miRNA* GGGACGGAGGTAGTAGTAT mismatches: 2 bulges: 2 |
pre-miRNA
TCTCCGGTCATAATATACTCCCTCCGTCCCAAGATATAAGCATTTTTAACTATAAATATAGACAACTGTGTGTCCAGATTCATAGGTGGAAATTGTTATA
TTTTGGGACGGAGGTAGTAGTATATAGTTTT
dot-bracket secondary structure
.........(((...((((.(((((((((((((((((((.((.((((..((((.(((...((((......))))...))).))))...)))).)))))))
)))))))))))))).)))).)))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTCCGGTCATAATATACTCCCTCCGTCCCAAGATATAAGCATTTTTAACTATAAATATAGACAACTGTGTGTCCAGATTCATAGGTGGAAATTGTTATA
TTTTGGGACGGAGGTAGTAGTATATAGTTTT
dot-bracket secondary structure
.........(((...((((.(((((((((((((((((((.((.((((..((((.(((...((((......))))...))).))))...)))).)))))))
)))))))))))))).)))).)))........
SIMILARITIES| miRBase osa-MIR1439: 0.0000004 PMRD osa-miRf11705-akr: 0.000000007 microPC miR1439: 0.00003 | UniProt no hits RFAM MIR1122: 1e-47 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
