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ABOUT THIS RECORD

ID: MNEST004099
species: Oryza sativa
miRNA family: MIR812
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAATAAGACGAGTGGTCAA

miRNA*
 GACCACTCGTCTTATTCAAAT

mismatches: 0
bulges: 0
View larger
pre-miRNA
 TTTCTTGTACTCCATACGTCTCATAATATAATTTTGAGTTTTTACTTTGTAATGTTTGACCACTCGTCTTATTCAAATTTTTCTTTATAAATATAAAAAA
CGAAAAGTTGTGCTTAAAGTACGTAGATAACAAATTAAGTCACAAATAAAATAAATAATAATTTTAAAATTTTTTGAATAAGACGAGTGGTCAAATGTTA
TAAGCAAAAACTCAAAATCTCTTATATTATGGAACGGAGGGAGTAGTATTCAAT

dot-bracket secondary structure
.......((((((...(((.(((((((((((((((((((((((..((((((((((((((((((((((((((((((((......((((.((.(((......
.......((((((((((.................))))).)))))............))).)).))))....))))))))))))))))))))))))))))
)))).))))))))))))....))))))))))).)))...)))))).........


SIMILARITIES
miRBase osa-MIR818e: 0.00000000000006

PMRD osa-miRf11994-akr: 3e-25

microPC miR818: 0.00000001		UniProt no hits

RFAM MIR812: 2e-51		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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