ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf89
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATCTTTAGTCTCGATTGCT miRNA* CAACCGAGACTAAAGATAAAA mismatches: 4 bulges: 0 |
pre-miRNA
ACTCTTCGCCGCGCATGCCGATCTTTTGTTTCGGTTGATGTTACCAACCGGGACTAGAAATAGATCTTTAGTCTCGATTGCTGTAATAAAGATCTTTTAA
CACCAACCGAGACTAAAGATAAAAAAAAG
dot-bracket secondary structure
.....(((..((....)))))(((...((((((((((.......)))))))))).))).....(((((((((((((.(((.(((..((((.....)))))
)).))).))))))))))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACTCTTCGCCGCGCATGCCGATCTTTTGTTTCGGTTGATGTTACCAACCGGGACTAGAAATAGATCTTTAGTCTCGATTGCTGTAATAAAGATCTTTTAA
CACCAACCGAGACTAAAGATAAAAAAAAG
dot-bracket secondary structure
.....(((..((....)))))(((...((((((((((.......)))))))))).))).....(((((((((((((.(((.(((..((((.....)))))
)).))).))))))))))))).........
SIMILARITIES| miRBase no hits PMRD osa-miRf11671-akr: 1e-16 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
