ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1432
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCAGGAGAGATGACACCGAC miRNA* AGGTGTCATCTCCCCTGAACA mismatches: 4 bulges: 0 |
pre-miRNA
TGCGTTCTTGTGGGGGGTTTGGGCCCTGTGATCAGGAGAGATGACACCGACATCGCCGGAATTCGTTCTTGGTCTTGTGCCATGATGAATTGATGGTCCG
TTTGATGCAGGTGTCATCTCCCCTGAACATAGGACTGACTGACCCTGAATGGATGT
dot-bracket secondary structure
.((((((...(((((((((..((.((((((.(((((.(((((((((((..(((((.((((..(((.((.((((.....)))).)).....)))...))))
..)))))..))))))))))).))))).)))))).))))))..)))))...))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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TGCGTTCTTGTGGGGGGTTTGGGCCCTGTGATCAGGAGAGATGACACCGACATCGCCGGAATTCGTTCTTGGTCTTGTGCCATGATGAATTGATGGTCCG
TTTGATGCAGGTGTCATCTCCCCTGAACATAGGACTGACTGACCCTGAATGGATGT
dot-bracket secondary structure
.((((((...(((((((((..((.((((((.(((((.(((((((((((..(((((.((((..(((.((.((((.....)))).)).....)))...))))
..)))))..))))))))))).))))).)))))).))))))..)))))...))))))
SIMILARITIES| miRBase osa-MIR1318: 5e-84 PMRD osa-miR1318: 5e-75 microPC miR1318: 5e-44 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: osa-miR1432 from PMRD (MNEST049117) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
