ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGCAATGCTAGAAAGTCTT miRNA* GACTTTCTGGCATTACTCACA mismatches: 1 bulges: 0 |
pre-miRNA
AGAGTACTATCTCCGCTTCAGGTTATAAGACTTTCTGGCATTACTCACATTCATTAACATATATATGAATGTGGGCAATGCTAGAAAGTCTTATAATATG
AAAAGGAGGAAGTATAG
dot-bracket secondary structure
...(((((.(((((..((((.(((((((((((((((((((((.(((((((((((..........))))))))))).))))))))))))))))))))).))
))..))))).)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGAGTACTATCTCCGCTTCAGGTTATAAGACTTTCTGGCATTACTCACATTCATTAACATATATATGAATGTGGGCAATGCTAGAAAGTCTTATAATATG
AAAAGGAGGAAGTATAG
dot-bracket secondary structure
...(((((.(((((..((((.(((((((((((((((((((((.(((((((((((..........))))))))))).))))))))))))))))))))).))
))..))))).)))))..
SIMILARITIES| miRBase osa-MIR819j: 2e-27 PMRD osa-miR819j: 2e-27 microPC miR819: 2e-42 | UniProt no hits RFAM MIR1122: 8e-27 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
