ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR819
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGGTTATAAGACTTTCTGG miRNA* AGAAAGTCTTATAATATGAAA mismatches: 1 bulges: 0 |
pre-miRNA
TAGAGTACTATCTCCGCTTCAGGTTATAAGACTTTCTGGCATTACTCACATTCATTAACATATATATGAATGTGGGCAATGCTAGAAAGTCTTATAATAT
GAAAAGGAGGAAGTATAGA
dot-bracket secondary structure
....(((((.(((((..((((.(((((((((((((((((((((.(((((((((((..........))))))))))).))))))))))))))))))))).)
)))..))))).)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAGAGTACTATCTCCGCTTCAGGTTATAAGACTTTCTGGCATTACTCACATTCATTAACATATATATGAATGTGGGCAATGCTAGAAAGTCTTATAATAT
GAAAAGGAGGAAGTATAGA
dot-bracket secondary structure
....(((((.(((((..((((.(((((((((((((((((((((.(((((((((((..........))))))))))).))))))))))))))))))))).)
)))..))))).)))))...
SIMILARITIES| miRBase osa-MIR819j: 2e-27 PMRD osa-miR819j: 2e-27 microPC miR819: 2e-42 | UniProt no hits RFAM MIR1122: 9e-27 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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