ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGCAATGCTAGAAAGTTTT miRNA* AACTTTTTAGCATTACCCATA mismatches: 1 bulges: 0 |
pre-miRNA
GGAAATACTTCCCTGTTTCATATTATAAAACTTTTTAGCATTACCCATACATTCATATATATATGTTAATAAATCTAGATATATATGTATGCCTAGATTT
ATTAACATCTATATGAATGAATGTGGGCAATGCTAGAAAGTTTTATAACCTGAAATGGAGGTAGTAATA
dot-bracket secondary structure
.....((((.((((((((((..((((((((((((((((((((.((((((((((((((((...((((((((((((((((.((((....)))).))))))))
)))))))).))))))))))..)))))).))))))))))))))))))))..)))))))).)).))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGAAATACTTCCCTGTTTCATATTATAAAACTTTTTAGCATTACCCATACATTCATATATATATGTTAATAAATCTAGATATATATGTATGCCTAGATTT
ATTAACATCTATATGAATGAATGTGGGCAATGCTAGAAAGTTTTATAACCTGAAATGGAGGTAGTAATA
dot-bracket secondary structure
.....((((.((((((((((..((((((((((((((((((((.((((((((((((((((...((((((((((((((((.((((....)))).))))))))
)))))))).))))))))))..)))))).))))))))))))))))))))..)))))))).)).))))...
SIMILARITIES| miRBase osa-MIR819j: 5e-38 PMRD osa-miR819j: 5e-38 microPC miR809: 0.0000000000001 | UniProt no hits RFAM MIR1122: 8e-25 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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