ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTAGCATTACCCACATTTA miRNA* AATGTGGGCAATGCTAGAAAG mismatches: 2 bulges: 0 |
pre-miRNA
CTCCACCACTGCTCTAGCATTACCCACATTTATATAGATGTTAATGAATCTAGCACATATATGTCTAGATTTATTAACACAAATATGAATGTGGGCAATG
CTAGAAAGTCTTATAA
dot-bracket secondary structure
.......(((..(((((((((.(((((((((((((...(((((((((((((((.(((....))))))))))))))))))...))))))))))))).))))
))))).))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CTCCACCACTGCTCTAGCATTACCCACATTTATATAGATGTTAATGAATCTAGCACATATATGTCTAGATTTATTAACACAAATATGAATGTGGGCAATG
CTAGAAAGTCTTATAA
dot-bracket secondary structure
.......(((..(((((((((.(((((((((((((...(((((((((((((((.(((....))))))))))))))))))...))))))))))))).))))
))))).))).......
SIMILARITIES| miRBase osa-MIR819e: 2e-33 PMRD osa-miR819e: 2e-33 microPC miR819: 4e-22 | UniProt no hits RFAM MIR1122: 1e-28 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
