ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGACTTTCTAGCATTACCC miRNA* GCAATGCTAGAAAATCTTATA mismatches: 2 bulges: 0 |
pre-miRNA
TGAGATACTACCTCCCTTTCATGTTATAAGACTTTCTAGCATTACCCACATTCATATAAATGCTGTCTAGATTCATTTACATATATATGAATGTGGGCAA
TGCTAGAAAATCTTATAATATGAAACGGAGGAAGTAACAT
dot-bracket secondary structure
.....((((.(((((.(((((((((((((((.(((((((((((.((((((((((((((.(((.................))).)))))))))))))).))
))))))))).))))))))))))))).))))).))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TGAGATACTACCTCCCTTTCATGTTATAAGACTTTCTAGCATTACCCACATTCATATAAATGCTGTCTAGATTCATTTACATATATATGAATGTGGGCAA
TGCTAGAAAATCTTATAATATGAAACGGAGGAAGTAACAT
dot-bracket secondary structure
.....((((.(((((.(((((((((((((((.(((((((((((.((((((((((((((.(((.................))).)))))))))))))).))
))))))))).))))))))))))))).))))).))))....
SIMILARITIES| miRBase osa-MIR819a: 2e-30 PMRD osa-miR819a: 2e-30 microPC miR819: 5e-19 | UniProt no hits RFAM MIR1122: 3e-45 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
