ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGCAATGCTAGAAAATCTT miRNA* GACTTTCTAGCATTACCCACA mismatches: 2 bulges: 0 |
pre-miRNA
GAGATACTACCTCCCTTTCATGTTATAAGACTTTCTAGCATTACCCACATTCATATAAATGCTGTCTAGATTCATTTACATATATATGAATGTGGGCAAT
GCTAGAAAATCTTATAATATGAAACGGAGGAAGTAACA
dot-bracket secondary structure
....((((.(((((.(((((((((((((((.(((((((((((.((((((((((((((.(((.................))).)))))))))))))).)))
)))))))).))))))))))))))).))))).))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGATACTACCTCCCTTTCATGTTATAAGACTTTCTAGCATTACCCACATTCATATAAATGCTGTCTAGATTCATTTACATATATATGAATGTGGGCAAT
GCTAGAAAATCTTATAATATGAAACGGAGGAAGTAACA
dot-bracket secondary structure
....((((.(((((.(((((((((((((((.(((((((((((.((((((((((((((.(((.................))).)))))))))))))).)))
)))))))).))))))))))))))).))))).))))...
SIMILARITIES| miRBase osa-MIR819a: 2e-30 PMRD osa-miR819a: 2e-30 microPC miR819: 5e-19 | UniProt no hits RFAM MIR1122: 3e-45 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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