miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST004192
species: Oryza sativa
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGACAATGCTAGAAAGTCTT

miRNA*
 GACTTTTTAGCATTGTCCCAT

mismatches: 1
bulges: 0
View larger
pre-miRNA
 ATCATATACTACCTCCGTTTCAAGTTATAAGACTTTTTAGCATTGTCCCATTCATATAGATGTTAATGAATAGACACACACATATGTCTAGATTTATTAA
CATGTATATGAATGTGGACAATGCTAGAAAGTCTTATAATATGAAACGGAGGAAGTACAAAG

dot-bracket secondary structure
......((((.(((((((((((.(((((((((((((((((((((((((((((((((((.(((((((((((((((((........))))))..))))))))
))).)))))))))).))))))))))))))))))))))))).))))))))))).)))).....


SIMILARITIES
miRBase osa-MIR819e: 4e-51

PMRD osa-miR819e: 4e-51

microPC miR819: 4e-26		UniProt no hits

RFAM MIR1122: 9e-43		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;